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Universal viewing of digital microscopy, whole slide imaging and digital pathology data

Project description

pma_python is a Python wrapper library for PMA.start (http://www.free.pathomation.com),
a universal viewer by Pathomation for whole slide imaging and microscopy.

YOU NEED TO HAVE PMA.START (OR PMA.CORE) RUNNING IN ORDER TO USE THIS
LIBRARY. PMA_PYTHON IS NOT A STAND-ALONE LIBRARY FOR WSI.

If you're working with

* microscopy data and are you tired of having to use a different
library for each vendor specific digital slide format
* image analysis software and are you looking for a way to have
complete control over your algorithms (and not just be able to
select those provided for you)
* novel evaluation methods for histology / pathology and do you
just wish there was a way to now automatically evaluate it on
100s of slides (batch processing)

and you're doing all of this in Python, then PMA.start and
pma_python are for you!

PMA.start can be downloaded free of charge from http://free.pathomation.com

With pma_python, you can inspect and navigate any type of
microscopic imaging file format available. Whether you have
macroscopic observations, whole slide imaging data, or fluorescent
snapshot observations, we can bring it all into Python now.

The following vendor formats are currently supported:

* TIFF (.tif, .tiff) with JPEG, JPEG2000, LZW, Deflate, Raw, RLE
* JPEG (.jpeg, .jpg)
* JPEG 2000 (.jp2)
* PNG (.png)
* Olympus VSI (.vsi) with lossless JPEG, JPEG, Raw
* Ventana / Roche BIF (.bif)
* Hamamatsu (.vms, .ndpi, .dcm) with JPEG, JPEG2000
* Huron Technologies (.tif)
* 3DHistech (.mrxs) with JPEG, PNG, BMP
* Aperio / Leica (.svs, .cws, .scn, .lif, DICOMDIR) with JPEG, JPEG2000
* Carl Zeiss (.zvi, .czi, .lsm) with Raw, PNG, JPEG, LZW, Deflate, JPEG2000
* Open Microscopy Environment OME-TIFF (.tf2, .tf8, .btf, .ome.tif)
* Nikon (.nd2, .tiff) with Deflate, JPEG, JPEG2000, LZW, Deflate, Raw, RLE
* Philips (.tif) with JPEG, JPEG2000, LZW, Deflate, Raw, RLE
* Sakura (.svslide) with JPEG(sqlite2, sqlite3, mssql)
* Menarini (.ini) with Raw
* Motic (.mds)
* Zoomify (.zif) with JPEG, JPEG2000, LZW, Deflate, Raw, RLE
* SmartZoom (.szi) with JPEG, BMP
* Objective Imaging / Glissano (.sws)

The most up to date list with supported file formats can be found at
http://free.pathomation.com/formats

Project details


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This version
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2.0.0.33

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2.0.0.29

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2.0.0.26

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2.0.0.25

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2.0.0.24

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Filename, size & hash SHA256 hash help File type Python version Upload date
pma_python-2.0.0.33.tar.gz (7.7 kB) Copy SHA256 hash SHA256 Source None May 18, 2018

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