Prapi Summary
More Detail information is on http://www.bioinfor.org/tool/PRAPI/.
PRAPI is a one-stop solution for Iso-Seq analysis of analyze alternative transcription initiation (ATI), alternative splicing (AS), alternative cleavage and polyadenylation (APA), natural antisense transcripts (NAT), and circular RNAs (circRNAs) comprehensively.
Update
2019.9.6
Fix APA support number Bugs.
Installation
Basic prapi installation (python 2.7 support)
Before install,Please install these base.
$conda install -y -c bioconda bx-python
$conda install -y -c bioconda pycairo
$conda install -c bioconda pysam
$conda install -c bioconda gmap
$conda install -c biocodna samtools==0.1.19
$conda install -c bioconda gmap==2016.09.23
$conda install -c bioconda cufflinks==2.2.1
$conda install -c bioconda bioconductor-edger
$conda install -c bioconda bioconductor-degseq
$pip install scipy
$pip install fisher
$pip install CIRCexplorer
$tar -xzvf SpliceGrapher-0.2.5.tar.gz
$cd SpliceGrapher-0.2.5
$python setup.py install
#After this,Please install prapi
$pip install prapi
####################################
#test file
tar -xvzf test_v2.tar.gz
cd test_v2
sh run.sh
####################################
See more complete tutorials on the documentation page.
RNA
Further Documentation
Citation
Gao Y, Wang H, Zhang H, Wang Y, Chen J, Gu L, (2017), PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq.Bioinformatics,Bioinformatics, btx830,https://doi.org/10.1093/bioinformatics/btx830
1 maintainer
Metadata
1 maintainer
Release files for prapi 6.2.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| prapi-6.2.0.tar.gz | 5.8 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| prapi-6.2.0-py2-none-any.whl | Python 2 | none | any | Details |
Total release size: 11.8 MB
Release files / prapi-6.2.0.tar.gz
| Download URL | prapi-6.2.0.tar.gz |
|---|---|
| Size | 5.8 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/1.11.0 pkginfo/1.4.2 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.8.0 tqdm/4.31.0 CPython/3.6.5
|
Release files / prapi-6.2.0-py2-none-any.whl
| Download URL | prapi-6.2.0-py2-none-any.whl |
|---|---|
| Size | 6.1 MB |
| Tags | Python 2 |
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SHA-256 checksum How to use checksums |
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twine/1.11.0 pkginfo/1.4.2 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.8.0 tqdm/4.31.0 CPython/3.6.5
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