ProteinPlot 2.0.1

Library for managing .pdb extension, plotting

Welcome to ProteinPlot's documentation!

Welcome to the documentation for ProteinPlot, a University package for analysing PDB entries in python

Introduction

ProteinPlot helps in the analysis of PDB entries. The given files from the databank of rcsb.org is loaded into pandas dataframes and in this way manipulations have become easier

Features

• PDB entry reading into pandas df
• Structure alignment
• Structure comparison
• Ramachadran plots
• 2D and 3D figures

Installation

Install via pip: pip install ProteinPlot

Quick Start

Here's a basic example:

The package automatically installs an IDE, that can be opened with the following bash command:

jupyter-lab

Load in the package and your first PDB file

from ProteinPlot import protplot example = protplot.read_pdb('6vxx')

You are ready to go. For further examples please visit the documentation!