PubMed XML Parser
Installation
python3 -m pip install pubmed_xml
Usage
CommandLine
pubmed_xml --help
# parse single
pubmed_xml 30003000
# parse batch
pubmed_xml 30003000,30003001,30003002
# parse multiple
pubmed_xml 30003000 30003001 30003002
# parse from xml file
pubmed_xml tests/pubmed22n1543.xml.gz -o out.jl
# save file
pubmed_xml 30003000,30003001,30003002 -o out.jl
Python
from pubmed_xml import Pubmed_XML_Parser
pubmed = Pubmed_XML_Parser()
for article in pubmed.parse('30003000,30003001,30003002'):
print(article) # Article<30003002>
print(article.data) # dict object
print(article.to_json(indent=2)) # json string
print(article.pmid, article.title, article.abstract) # by attribute
print(article['pmid'], article['title'], article['abstract']) # by key
1 maintainer
Release files for pubmed-xml 1.0.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pubmed_xml-1.0.3.tar.gz | 6.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pubmed_xml-1.0.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 13.9 kB
Release files / pubmed_xml-1.0.3.tar.gz
| Download URL | pubmed_xml-1.0.3.tar.gz |
|---|---|
| Size | 6.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.8.8
|
Release files / pubmed_xml-1.0.3-py3-none-any.whl
| Download URL | pubmed_xml-1.0.3-py3-none-any.whl |
|---|---|
| Size | 7.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.8.8
|
