pyAFQ
Automated Fiber Quantification ... in Python.
For details, see Documentation
For further analysis of results, see AFQ-Insight
Citing pyAFQ
If you use pyAFQ in a scientific publication, please cite our papers:
Kruper J, Richie-Halford A, Qiao J, Gilmore A, Chang K, Grotheer M, et al. (2025) A software ecosystem for brain tractometry processing, analysis, and insight. PLoS Comput Biol 21(8): e1013323. https://doi.org/10.1371/journal.pcbi.1013323
Kruper, J., Yeatman, J. D., Richie-Halford, A., Bloom, D., Grotheer, M., Caffarra, S., Kiar, G., Karipidis, I. I., Roy, E., Chandio, B. Q., Garyfallidis, E., & Rokem, A. Evaluating the Reliability of Human Brain White Matter Tractometry. DOI:10.52294/e6198273-b8e3-4b63-babb-6e6b0da10669
@article{kruper2025software,
title={A software ecosystem for brain tractometry processing, analysis, and insight},
author={Kruper, John and Richie-Halford, Adam and Qiao, Joanna and Gilmore, Asa and Chang, Kelly and Grotheer, Mareike and Roy, Ethan and Caffarra, Sendy and Gomez, Teresa and Chou, Sam and others},
journal={PLoS computational biology},
volume={21},
number={8},
pages={e1013323},
year={2025},
publisher={Public Library of Science San Francisco, CA USA},
doi=10.1371/journal.pcbi.1013323
}
@article {Kruper2021-xb,
title = "Evaluating the reliability of human brain white matter
tractometry",
author = "Kruper, John and Yeatman, Jason D and Richie-Halford, Adam and
Bloom, David and Grotheer, Mareike and Caffarra, Sendy and Kiar,
Gregory and Karipidis, Iliana I and Roy, Ethan and Chandio,
Bramsh Q and Garyfallidis, Eleftherios and Rokem, Ariel",
journal = "Apert Neuro",
publisher = "Organization for Human Brain Mapping",
volume = 1,
number = 1,
month = nov,
year = 2021,
doi = 10.52294/e6198273-b8e3-4b63-babb-6e6b0da10669,
}
1 maintainer
Metadata
1 maintainer
Release files for pyAFQ 3.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pyafq-3.3.tar.gz | 23.0 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pyafq-3.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 23.4 MB
Release files / pyafq-3.3.tar.gz
| Download URL | pyafq-3.3.tar.gz |
|---|---|
| Size | 23.0 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.13.12
|
Release files / pyafq-3.3-py3-none-any.whl
| Download URL | pyafq-3.3-py3-none-any.whl |
|---|---|
| Size | 369.7 kB |
| Tags | Python 3 |
|
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No |
| Uploaded via |
twine/6.1.0 CPython/3.13.12
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