pyamr

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PyAMR is a python lightweight library to facilitate the computation of common Antimicrobial Resistance (AMR) related statistics such as the proportion of resistance isolates, the resistance trend or the antimicrobial spectrum of activity. In addition, it includes a number of examples to visualise such information which relay on plotting libraries such as matplotlib, seaborn or plotly.

About the project

EPIC IMPOC is an NIHR i4i funded project which aims to develop an intelligent clinical decision support system to help doctors prescribe the most appropriate antibiotics. EPIC IMPOC is a collaborative project between medics and other health-care professionals from the National Institute for Health Research Health Protection Research Unit (NIHR HPRU) and engineers from the Centre for Bio-Inspire Technology (CBIT) at Imperial College London.

When using any of this project's source code, please cite:

@article{hernandez2021resistance,
  title = {Resistance Trend Estimation Using Regression Analysis to Enhance Antimicrobial Surveillance: A Multi-Centre Study in London 2009--2016},
  author = {Hernandez, Bernard and Herrero-Vi{\~n}as, Pau and Rawson, Timothy M and Moore, Luke SP and Holmes, Alison H and Georgiou, Pantelis},
  journal = {Antibiotics},
  volume = {10},
  number = {10},
  pages = {1267},
  year = {2021},
  month = oct,
  publisher = {MDPI},
  doi = {10.3390/antibiotics10101267},
  url = {},
}

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Please follow the Installation Guide.

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$ python -m build --sdist --wheel