Skip to main content

Wrappers of bioinformatics tools, for analysis pipeline

Project description

pybiotools4p

Command tools in bioinformatics analysis wrapper in this python package, with default parameters and could be specify in specific analysis.

TODO.

Install

pip install pybiotools

Tools included

fastp

fastqc

STAR

hisat2

samtools

stringtie

featurecounts

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pybiotools4p-0.0.1rc6.tar.gz (17.7 kB view details)

Uploaded Source

Built Distribution

pybiotools4p-0.0.1rc6-py3-none-any.whl (30.0 kB view details)

Uploaded Python 3

File details

Details for the file pybiotools4p-0.0.1rc6.tar.gz.

File metadata

  • Download URL: pybiotools4p-0.0.1rc6.tar.gz
  • Upload date:
  • Size: 17.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.6.1 requests/2.25.0 setuptools/47.1.0 requests-toolbelt/0.9.1 tqdm/4.53.0 CPython/3.7.9

File hashes

Hashes for pybiotools4p-0.0.1rc6.tar.gz
Algorithm Hash digest
SHA256 d8462a74f22d7df257635f2fa81803bc97d2979613bc2306f7183705c30f827d
MD5 1143681a0218dab7914b18e6732b2cf7
BLAKE2b-256 a38eb2c5a3fa74a34c9abb0f702a2c4f1d4ec5e2099c58a0e7c9e00029bdf96d

See more details on using hashes here.

File details

Details for the file pybiotools4p-0.0.1rc6-py3-none-any.whl.

File metadata

  • Download URL: pybiotools4p-0.0.1rc6-py3-none-any.whl
  • Upload date:
  • Size: 30.0 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.6.1 requests/2.25.0 setuptools/47.1.0 requests-toolbelt/0.9.1 tqdm/4.53.0 CPython/3.7.9

File hashes

Hashes for pybiotools4p-0.0.1rc6-py3-none-any.whl
Algorithm Hash digest
SHA256 48159e18e1b0d07aa646ed2219579c6e435e473a71be42785447c077d80ee7b4
MD5 53fe65366e9d73b8a04a15b4a2ea4aa8
BLAKE2b-256 69c32f0dc6d3757f6b5a4f3a56061fc0577471ab167058736500d9948d0626b3

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page