Parse Genetic files via bgi like sql indexing
Project description
PyGenicParser
Parse Genetic files via bgi like sql indexing
Designed to use sql database style of metadata created by bgenix .bgi files for indexing, but generalised to both plink and bgen file formats. This was a generalisation of the approach used by the [pybgen], with an attempt to include some of the features of [pysnptools] such as indexing, although this system isn't as clever in terms of reads.
All the source code can be found at the PyGenicParser git repository
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