pymmcore-MDA-writers
This package provides writers for [pymmcore-plus]. At the time of writing pymmc+ provides hooks for saving images but does not implement any mechanism for saving image (check in https://github.com/tlambert03/pymmcore-plus/pull/29 for updates). Currently provided are:
- A simple multifile tiff writer - can be loaded with
tiffffile - A simple zarr writer - not ome-zarr
pip install pymmcore-mda-writers
(This will require a minimum of pymmcore-plus>=0.4.0 which has not yet been released. You can install a working version with pip install git+https://github.com/tlambert03/pymmcore-plus)
All you need to add to your script is:
# tiff writer
writer = SimpleMultiFileTiffWriter("data/tiff_writer_example/run")
# zarr writer
writer = ZarrWriter("data/zarr_writer_example/run", img_shape=(512, 512), dtype=np.uint16)
for a complete example see the examples folder.
1 maintainer
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file pymmcore_MDA_writers-0.4.0.tar.gz.
File metadata
- Download URL: pymmcore_MDA_writers-0.4.0.tar.gz
- Upload date:
- Size: 11.5 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via:
twine/3.8.0 pkginfo/1.8.2 readme-renderer/33.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.63.0 importlib-metadata/4.11.2 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.10.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
fb11080c980a623eec32fba68c57db68dd441c17f880ba9b37ced77e025f201c
|
|
| MD5 |
6cce6647bf53a6990ed54586deea4529
|
|
| BLAKE2b-256 |
493ed6d0214ce838b3207550332d30e917b0641196a2ac58d40daa79eaee27b0
|
File details
Details for the file pymmcore_MDA_writers-0.4.0-py2.py3-none-any.whl.
File metadata
- Download URL: pymmcore_MDA_writers-0.4.0-py2.py3-none-any.whl
- Upload date:
- Size: 8.0 kB
- Tags: Python 2, Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via:
twine/3.8.0 pkginfo/1.8.2 readme-renderer/33.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.63.0 importlib-metadata/4.11.2 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.10.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
951a5996eee5cb0306a0763d55d7c9eb24772fab5df3fafc864420da3b74064a
|
|
| MD5 |
eec4a40c48878d266d164690628fe9b1
|
|
| BLAKE2b-256 |
0660015dbf17922049033b92eed6a983b046c62387523b3feed177d0fe162706
|
