pyPhasesRecordloaderSOF 0.1.0

Adds a record loaders to the pyPhases package

Extension for pyPhasesRecordloader

Extension to load data records from the Study of Osteoporotic Fractures (SOF) database.

The extensions requires a downloaded version of the sof dataset. The location can be set through the config value sof-path.

Usage

In a phase you can acess the data through the RecordLoader:

Add the plugins and config values to your project.yaml:

name: SOFProject
plugins:
  - pyPhasesML
  - pyPhasesRecordloaderSOF
  - pyPhasesRecordloader

phases:
  - name: MyPhase

config:
  sof-path: C:/datasets/sof

In a phase (phases/MyPhase.py) you can acess the records through the RecordLoader:

from pyPhasesRecordloader import RecordLoader
from pyPhases import Phase

class MyPhase(Phase):
    def run(self):
      recordIds = recordLoader.getRecordList()
      for recordId in recordIds:
        record = recordLoader.getRecord(recordId)

Run Your project with python -m phases run MyPhase

Annotations

Count	EventConcept
69280	Limb movement - right|Limb Movement (Right)
64941	Limb movement - left|Limb Movement (Left)
61557	Hypopnea|Hypopnea
58100	ASDA arousal|Arousal (ASDA)
24017	Stage 2 sleep|2
17201	SpO2 artifact|SpO2 artifact
15620	Stage 3 sleep|3
14126	Wake|0
9281	Obstructive apnea|Obstructive Apnea
8589	Stage 1 sleep|1
3295	REM sleep|5
1898	Arousal|Arousal ()
1580	Stage 4 sleep|4
1078	Central apnea|Central Apnea
859	Technician Notes
453	Recording Start Time
353	Periodic leg movement - right|PLM (Right)
250	Periodic leg movement - left|PLM (Left)
217	SpO2 desaturation|SpO2 desaturation
27	Unscored|9
2	Respiratory artifact|Respiratory artifact
2	Mixed apnea|Mixed Apnea