Extension for pyPhasesRecordloader

Extension to load data records from the Study of Osteoporotic Fractures (SOF) database.

The extensions requires a downloaded version of the sof dataset. The location can be set through the config value sof-path.

Usage

In a phase you can acess the data through the RecordLoader:

Add the plugins and config values to your project.yaml:

name: SOFProject
plugins:
  - pyPhasesML
  - pyPhasesRecordloaderSOF
  - pyPhasesRecordloader

phases:
  - name: MyPhase

config:
  sof-path: C:/datasets/sof

In a phase (phases/MyPhase.py) you can acess the records through the RecordLoader:

from pyPhasesRecordloader import RecordLoader
from pyPhases import Phase

class MyPhase(Phase):
    def run(self):
      recordIds = recordLoader.getRecordList()
      for recordId in recordIds:
        record = recordLoader.getRecord(recordId)

Run Your project with python -m phases run MyPhase

Annotations