This release is a pre-release and may not be stable for production use.
master branch
develop branch
Pypore
This project is for nanopore-translocation event finding/analysis. It’s written in Python, with numpy/scipy as a Matlab replacement. The gui library is pyside, and pyqtgraph is used for plotting. More information can be found here.
Note that Pypore/PyporeGui are pre-release, major changes can happen at any time.
Pull requests are welcome!
Installing
Dependencies
Pypore has the following dependencies:
numpy
scipy
PyTables
PyporeGui depends on all of the above and:
PySide
pyqtgraph
Building from source additionally requires:
Cython
Running the tests requires:
nose
Installing with pip
Pypore is currently pre-release, so we’ll install with the –pre tag.
pip install pypore --preA new dev release is deployed with every push to the develop branch, so upgrade often!
pip install pypore --pre --upgradeInstalling from source
Clone or download the source. In the directory (with setup.py), run one of the following:
python setup.py installor
pip install .Running the tests:
python setup.py testsPyporeGui
Start PyporeGui with:
import pyporegui
pyporegui.start()License
Copyright 2014 Will Parkin
Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
1 maintainer
Release files for pypore 0.0.6.dev20180702231556
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pypore-0.0.6.dev20180702231556.tar.gz | 1.9 MB | Details |
Release files / pypore-0.0.6.dev20180702231556.tar.gz
| Download URL | pypore-0.0.6.dev20180702231556.tar.gz |
|---|---|
| Size | 1.9 MB |
| Tags | Source |
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