Python Systems Biology modeling framework
PySB (pronounced “Pie Ess Bee”) is a framework for building rule-based mathematical models of biochemical systems. It works nicely with scientific Python libraries such as NumPy, SciPy and SymPy for model simulation and analysis.
Installation
PySB depends on the following:
numpy
scipy
sympy
Perl - http://www.perl.org/get.html
BioNetGen - http://bionetgen.org/
For full instructions, see the Installation chapter of the manual at http://docs.pysb.org/en/latest/installation.html
Documentation
The manual is available online at http://docs.pysb.org/. You can also generate the documentation locally by installing Sphinx and running the following commands:
$ cd doc $ make html
Then open _build/html/index.html in your web browser.
Release files for pysb 1.17.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pysb-1.17.0.tar.gz | 379.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pysb-1.17.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 666.5 kB
Release files / pysb-1.17.0.tar.gz
| Download URL | pysb-1.17.0.tar.gz |
|---|---|
| Size | 379.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Uploaded via |
twine/6.2.0 CPython/3.14.0
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Release files / pysb-1.17.0-py3-none-any.whl
| Download URL | pysb-1.17.0-py3-none-any.whl |
|---|---|
| Size | 286.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.14.0
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