PySeqTools 0.1.5

a python package for sequence alignment, simulation and visulization

seq_align_two_vars

General info

This project is created by Jeffrey Cai under supervised by Nathan Ryan, Professor in Mathematics department of Bucknell University.
It is used to align sequences with non-uniform varaibales like time or distance. It is based on the idea of Alexandar Murph(https://github.com/cran/sawnuti). We implemented his method in this python package and not only to analysis non-uniform time intervals, but including analysis of more than one varaibles like both time and dis.

Technologies

Project is created with:

• numpy version: 1.22.4
• pandas version: 1.5.0
• matplotlib version: 3.6.0
• networkx version: 3.0
• scipy version: 1.10.0
• sklearn version: 1.2.1

Data import:

1. use make_sample
2. read in datafile
3. input networks, generate random walk data

Setup

To run this project, install it locally using pip install:

$ pip install seq-align-two-vars

Reference guide

See https://caidog1129.github.io/seq_align_two_vars/seq_align_two_vars.html