A python, matplotlib, and QT based GUI for transient absorption processing.
Project description
pytas
Python for transient absorption spectroscopy: a suite of GUI tools based on matplotlib and QT.
Installation
conda install -c conda-forge pytas
List of main utilities
TA_plot_matrix_GUI usually abbreviated as TA_plt
TA_merge_matrices_GUI usually abbreviated as TA_mrg
TA_t0_correction_and_background_removal_GUI usually abbreviated as TA_t0
List of Shared Supporting Functions
1: TA_sh.TA_matrix_window_average(TA_matrix,window_size)
2: TA_sh.create_TA_Blue_White_Red_colormap(min_max)
3: TA_sh.create_TA_Blue_White_Red_Black_colormap(min_max)
4: TA_sh.list_hdf5_contents(HDF5_filename)
5: TA_sh.load_hdf5_data(filename,dataset_path_string)
Example Work Flow
TA_blue_spectrum_hdf5_filename = 'HHHF_Zn_heme_ZnCl_p425nm_blue_300uW.h5'
TA_red_spectrum_hdf5_filename = 'HHHF_Zn_heme_ZnCl_p425nm_red_300uW.h5'
TA_t0.t0_correction_and_background_removal(TA_blue_spectrum_hdf5_filename)
TA_t0.t0_correction_and_background_removal(TA_red_spectrum_hdf5_filename)
TA_mrg.merge_TA_matrices(TA_blue_spectrum_hdf5_filename+'.t0_corr.csv.merged.csv',TA_red_spectrum_hdf5_filename+'.t0_corr.csv.merged.csv')
Next Code To Develop
o Develop a SVD amd Global Analysis module
File Locations
/...BACKED_UP/Software/...Transient_Absorption_Processing/python_qt_TA_data_processing_GUI
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