pyVertexModel is versatile 3D vertex model to model tissue and cell mechanics, in particular, regarding tissue repair.
Please, to ensure you use a polished version, use the 'paper' version/branch: https://github.com/Pablo1990/pyVertexModel/tree/paper
Environment
conda create -n pyVertexModel python=3.9
conda activate pyVertexModel
pip install -r requirements.txt
Usage
The first time you run the code, you need to compile the cython code. To do so, run the following commands:
python setup.py build_ext --inplace
To run the code, you can use the following command:
python main.py
To run the tests, we use 'tox':
tox
Changing the parameters
You can change the parameters of the model in the parameters/set.py file. At the moment, you should change it under
the 'wing_disc()' function.
Each simulation will be saved in a different folder in the results directory. The name of the folder will be the date and time of the simulation.
Help
For any issues with the code, you can put an issue in the repository. For other matters, you can contact Pablo Vicente Munuera (p.munuera@ucl.ac.uk).
1 maintainer
Metadata
1 maintainer
Release files for pyVertexModel 1.0.7
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pyvertexmodel-1.0.7.tar.gz | 23.0 MB | Details |
Release files / pyvertexmodel-1.0.7.tar.gz
| Download URL | pyvertexmodel-1.0.7.tar.gz |
|---|---|
| Size | 23.0 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
c412143693d58713d5478c160754543958c087513b0d1e8fd52ed1520fdbd65d
|
|
BLAKE2b-256 checksum How to use checksums |
b8ac5921f25261c7e4abd2d38777ab1d97661b3e8d16f12be6cc0b8399332e5f
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.12
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Apr 9, 2026.
Transparency log
