pyQTL
pyQTL is a python module for analyzing and visualizing quantitative trait loci (QTL) data.
The following functionalities are provided:
qtl.annotation: class for working with gene annotations; includes a GTF parser.qtl.coloc: Python implementation of core functions from the R COLOC package.qtl.io: functions for reading/writing BED and GCT files.qtl.locusplot: functions for generating LocusZoom-style regional association plots.qtl.pileup: functions for visualizing QTL effects in read pileups from, e.g., RNA-seq data.qtl.plot: plotting functions for QTLs.
Install
You can install pyQTL using pip:
pip3 install qtl
or directly from this repository:
$ git clone git@github.com:broadinstitute/pyqtl.git
$ cd pyqtl
# set up virtual environment and install
$ virtualenv venv
$ source venv/bin/activate
(venv)$ pip install -e .
1 maintainer
Metadata
1 maintainer
Release files for qtl 0.1.10
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| File | Size | Uploaded | Provenance | |
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| qtl-0.1.10.tar.gz | 59.4 kB | Without provenance | Details |
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| qtl-0.1.10-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 123.4 kB
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