Some tools I find useful for working with Ig receptor sequences
Project description
receptor_utils
Some tools I find useful for working with Ig receptor sequences, including support for allele sequence naming and the creation of custom IgBlast databases. Please see the documentation for further details.
Changes in version 0.0.42:
- better handling of long target sequences
Changes in version 0.0.41:
- annotate_j: fix issue with processing FASTA input
Changes in version 0.0.40:
- The submodule name receptor_utils.number_ighv has been changed to receptor_utils.number_v to reflect its wider scope. The old name will continue to work for the time being but will raise a deprecation warning.
- In receptor_utils.simple_bio_seq, write_fasta(seqs, filename) has become write_fasta(filename, seqs) for consistency with write_csv. The old calling pattern will continue to work for the time being but will raise a deprecation warning.
Changes in version 0.0.39:
- annotate_j and make_igblast_ndm will now accept a germline set in AIRR Community JSON format, as an alternative to providing the set in FASTA format.
Changes in version 0.0.38:
- Improve reporting of issues with conserved residues
- Change URL for fetching IMGT reference sets to use https
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