RhoTermPredict (Barrick Lab Fork)
Project description
RhoTermPredict
RhoTermPredict algorithm in python language
RhoTermPredict is an algorithm for the prediction of Rho-dependent transcription terminators in bacterial genomes. It searchs for a putative RUT site followed by a putative pause site for RNA polymerase (hairpin structure and/or pause-consensus element).
INPUT: genome sequences file in fasta format
OUTPUT: a csv file containing the coordinates of predicted Rho-dependent terminators and a txt file cointaining some informations about predictions
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