Project description

RhoTermPredict

RhoTermPredict algorithm in python language

RhoTermPredict is an algorithm for the prediction of Rho-dependent transcription terminators in bacterial genomes. It searchs for a putative RUT site followed by a putative pause site for RNA polymerase (hairpin structure and/or pause-consensus element).

INPUT: genome sequences file in fasta format

OUTPUT: a csv file containing the coordinates of predicted Rho-dependent terminators and a txt file cointaining some informations about predictions

Project details

These details have not been verified by PyPI

Project links

Release history Release notifications | RSS feed

This version

3.4

Aug 8, 2024

3.3

Mar 13, 2024

3.2

Dec 18, 2023

3.1

Mar 17, 2023

3.0

Sep 26, 2022

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

rhotermpredict-3.4.tar.gz (18.9 kB view hashes)

Uploaded Aug 8, 2024 Source

Built Distribution

rhotermpredict-3.4-py3-none-any.whl (18.9 kB view hashes)

Uploaded Aug 8, 2024 Python 3

Hashes for rhotermpredict-3.4.tar.gz

Hashes for rhotermpredict-3.4.tar.gz
Algorithm	Hash digest
SHA256	`15a45581595e647e0f9dca31df45a5820144d2d5a5097bb61102bc57134acc36`
MD5	`ef17c7fe8c17276e79b87c3e2f58f518`
BLAKE2b-256	`97d19c4ef5c2c4ef4835e05afa6d57fb2b46687cb774f687251cb32f1bd06129`

Hashes for rhotermpredict-3.4-py3-none-any.whl

Hashes for rhotermpredict-3.4-py3-none-any.whl
Algorithm	Hash digest
SHA256	`9ff873959e15649a032434973885cc84d3329ffa1d10bb2eb720b1c6593ca8eb`
MD5	`a14d01ef9326ff515f65fe8b4e7b4d37`
BLAKE2b-256	`6b90b3cfb67324d334b4484ea7cd221fbbdefdd67ee64adb00514f16059bd39d`