A python command-line utility for working with RiboSeq.Orgs Data Portal
Project description
RDP-Tools
A Python command-line utility for programmatically interacting with RiboSeq.Orgs Data Portal.
- Free software: MIT license
- Documentation: https://RDP-Tools.readthedocs.io
Installation
Install RDP-Tools by running:
pip install RiboSeq-DP-Tools
or:
docker pull quay.io/jackcurragh/rdp-tools
Usage
RDP-Tools is intended to be used as a command line tool.
To collapse a FASTQ file, run:
RDP-Tools collapse <input_FASTQ>
To inflate a FASTA file, run:
RDP-Tools inflate <input_FASTA>
To inflate a FASTA to a FASTQ file, run:
RDP-Tools inflate <input_FASTA> -o <output_file>.fastq/fq
To inflate a BAM file, run:
RDP-Tools inflate <input_BAM>
For more information on how to use RDP-Tools, see the documentation_ or use :code:--help
documentation: https://rdp-tools.readthedocs.io/en/latest/?version=latest
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