rnanorm

Normalization of RNA-seq gene expression.

Project description

Normalization of RNA-seq gene expression. Supported methods: Transcript per kilobase million (TPM) and Counts per million (CPM).

Usage

Install rnanorm Python package:

pip install rnanorm

Run rnanorm command line tool:

rnanorm expr.tsv --cpm-output=expr.cpm.tsv --tpm-output=expr.tpm.tsv --gene-lengths=lengths.tsv

Contributing

Install rnanorm Python package for development:

flit install --deps=all --symlink

Run all tests and linters:

tox

Project details

Release history Release notifications | RSS feed

2.1.0

Nov 6, 2023

2.0.1

Sep 27, 2023

2.0.0

Jun 21, 2023

2.0.0rc2 pre-release

Jun 13, 2023

2.0.0rc1 pre-release

Jun 12, 2023

1.5.1

May 24, 2022

1.5.0

Apr 11, 2022

1.4.0

Sep 1, 2020

1.3.1

Aug 12, 2020

1.3.0

Aug 6, 2020

1.2.1

Aug 2, 2020

This version

1.2.0

Aug 1, 2020

1.1.0

Jul 30, 2020

1.0.0

Jul 29, 2020

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rnanorm-1.2.0.tar.gz (3.2 kB view hashes)

Uploaded Aug 1, 2020 Source

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Uploaded Aug 1, 2020 Python 3

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