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xml_dwarf

Mining XML/HTML fast

PyPI version Python version License PyPI Downloads

This is the rust part of the library xdwarf

Installation

pip install rust_dwarf

Here's a preview on how xdwarf works

dwarf = Dwarf.from_glob(".../pmc_xml/PMC003xxxxxx/PMC31*.xml", "PMC",20)

Define the mining detail as xpath query pattern, chaining multistage mining is well supported.

dwarf.find_one('article-meta > article-id[pub-id-type=pmid]' , "pmid")
dwarf.find_one("abstract", "abstract").find_many("p", "paragraph")

# mining stage can be chained to longer detials
reference = dwarf.find_one("ref-list", "ref_list").find_many("ref","reference")
reference.find_one("pub-id[pub-id-type=pmid]", "ref_id")
reference.find_one("pub-id[pub-id-type=doi]", "doi")
ref_name = reference.find_many("name", "ref_name")
ref_name.find_one("surname", "ref_surname")
dwarf.set_necessary("pmid")
dwarf.create_children()

Mining start

result = dwarf()

See result

result.child_df().head(2)

See child result

result['ref_list'].child_df().head()

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