Segmentation-free Analysis of In Situ Capture data

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Project description

sainsc

/ˈsaiəns/

"Segmentation-free Analysis of In Situ Capture data" or alternatively "Stupid Acronyms In Science"

sainsc is a segmentation-free analysis tool for spatial transcriptomics from in situ capture technologies (but also works for imaging-based technologies). It is easily integratable with the scverse (i.e. scanpy and squidpy) by exporting data in AnnData or SpatialData format.

Installation

sainsc will be made available on PyPI and bioconda. For detailed installation instructions please refer to the documentation.

Documentation

For an extensive documentation of the package please refer to the ReadTheDocs page

Versioning

This project follows the SemVer guidelines for versioning.

Citations

If you are using sainsc for your research please cite

Müller-Bötticher, N., Tiesmeyer, S., Eils, R., and Ishaque, N. "Sainsc: a computational tool for segmentation-free analysis of in-situ capture" bioRxiv (2024) https://doi.org/10.1101/2024.08.02.603879

License

This project is licensed under the MIT License - for details please refer to the LICENSE file.

Project details

These details have not been verified by PyPI

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This version

0.1.1

Aug 6, 2024

0.1.0

Aug 5, 2024

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sainsc-0.1.1-cp312-cp312-musllinux_1_2_x86_64.whl (4.4 MB view hashes)

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sainsc-0.1.1-cp311-cp311-musllinux_1_2_x86_64.whl (4.4 MB view hashes)

Uploaded Aug 6, 2024 CPython 3.11 musllinux: musl 1.2+ x86-64

sainsc-0.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB view hashes)

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sainsc-0.1.1-cp311-cp311-macosx_10_9_x86_64.whl (4.0 MB view hashes)

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sainsc-0.1.1-cp310-cp310-musllinux_1_2_x86_64.whl (4.4 MB view hashes)

Uploaded Aug 6, 2024 CPython 3.10 musllinux: musl 1.2+ x86-64

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sainsc-0.1.1-cp310-cp310-macosx_11_0_arm64.whl (3.7 MB view hashes)

Uploaded Aug 6, 2024 CPython 3.10 macOS 11.0+ ARM64

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Uploaded Aug 6, 2024 CPython 3.10 macOS 10.9+ x86-64

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Hashes for sainsc-0.1.1.tar.gz
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Hashes for sainsc-0.1.1-cp312-cp312-win_amd64.whl
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Hashes for sainsc-0.1.1-cp312-cp312-musllinux_1_2_x86_64.whl
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Hashes for sainsc-0.1.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for sainsc-0.1.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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Hashes for sainsc-0.1.1-cp312-cp312-macosx_11_0_arm64.whl

Hashes for sainsc-0.1.1-cp312-cp312-macosx_11_0_arm64.whl
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Hashes for sainsc-0.1.1-cp312-cp312-macosx_10_9_x86_64.whl

Hashes for sainsc-0.1.1-cp312-cp312-macosx_10_9_x86_64.whl
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Hashes for sainsc-0.1.1-cp311-cp311-win_amd64.whl

Hashes for sainsc-0.1.1-cp311-cp311-win_amd64.whl
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Hashes for sainsc-0.1.1-cp311-cp311-musllinux_1_2_x86_64.whl

Hashes for sainsc-0.1.1-cp311-cp311-musllinux_1_2_x86_64.whl
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Hashes for sainsc-0.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for sainsc-0.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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Hashes for sainsc-0.1.1-cp311-cp311-macosx_11_0_arm64.whl

Hashes for sainsc-0.1.1-cp311-cp311-macosx_11_0_arm64.whl
Algorithm	Hash digest
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Hashes for sainsc-0.1.1-cp311-cp311-macosx_10_9_x86_64.whl

Hashes for sainsc-0.1.1-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm	Hash digest
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Hashes for sainsc-0.1.1-cp310-cp310-win_amd64.whl

Hashes for sainsc-0.1.1-cp310-cp310-win_amd64.whl
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Hashes for sainsc-0.1.1-cp310-cp310-musllinux_1_2_x86_64.whl

Hashes for sainsc-0.1.1-cp310-cp310-musllinux_1_2_x86_64.whl
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Hashes for sainsc-0.1.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for sainsc-0.1.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
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Hashes for sainsc-0.1.1-cp310-cp310-macosx_11_0_arm64.whl

Hashes for sainsc-0.1.1-cp310-cp310-macosx_11_0_arm64.whl
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