sambaflux 0.1.0

Sampling Biomarker Analysis using flux sampling

SAMBAflux

Description

SAMpling Biomarker Analysis is a python package for running flux sampling on metabolic networks.

Visuals

[add example plots here]

Getting started

Requirements

• Python 3.7+
• cobrapy
• A solver (GLPK, CPLEX, GUROBI)
• Access to a computer cluster or powerful computer

Installation

Install via pip:

pip install sambaflux

Usage

Use examples liberally, and show the expected output if you can. It's helpful to have inline the smallest example of usage that you can demonstrate, while providing links to more sophisticated examples if they are too long to reasonably include in the README.

Confirmed working models

Roadmap

• Add support for multiple KOs at once
• Add the option to reduce flux rates in addition to KO

Authors

Juliette Cooke

Acknowledgments

License

MIT License (see LICENSE file)

Project status

Currently active on this project.