.. raw:: html
|PyPI| |PyPIDownloads| |Docs|
Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data.
What is scArches?
scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations.
Usage and installation
See here <https://scarches.readthedocs.io/>_ for documentation and tutorials.
Support and contribute
If you have a question or new architecture or a model that could be integrated into our pipeline, you can
post an issue <https://github.com/theislab/scarches/issues/new>__ or reach us by email <mo.lotfollahi@gmail.com>_.
Reference
If scArches is helpful in your research, please consider citing the following paper <https://www.nature.com/articles/s41587-021-01001-7>_:
::
@article{lotfollahi2021mapping,
title={Mapping single-cell data to reference atlases by transfer learning},
author={Lotfollahi, Mohammad and Naghipourfar, Mohsen and Luecken, Malte D and Khajavi,
Matin and B{\"u}ttner, Maren and Wagenstetter, Marco and Avsec, {\v{Z}}iga and Gayoso,
Adam and Yosef, Nir and Interlandi, Marta and others},
journal={Nature Biotechnology},
pages={1--10},
year={2021},
publisher={Nature Publishing Group}}
.. |PyPI| image:: https://img.shields.io/pypi/v/scarches.svg :target: https://pypi.org/project/scarches
.. |PyPIDownloads| image:: https://pepy.tech/badge/scarches :target: https://pepy.tech/project/scarches
.. |Docs| image:: https://readthedocs.org/projects/scarches/badge/?version=latest :target: https://scarches.readthedocs.io
4 maintainers
Release files for scArches 0.6.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| scArches-0.6.1.tar.gz | 39.8 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| scArches-0.6.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 39.9 MB
Release files / scArches-0.6.1.tar.gz
| Download URL | scArches-0.6.1.tar.gz |
|---|---|
| Size | 39.8 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
187463c25781d5c5586c129ad137d96327a9f8604d530a696d5f568a9225d77c
|
|
BLAKE2b-256 checksum How to use checksums |
7b8df896d1e929be59cd16e9f58837747deb0a2450cfe8b36f68714f9e8ee800
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/0.0.0 pkginfo/1.7.0 requests/2.25.1 setuptools/52.0.0.post20210125 requests-toolbelt/0.9.1 tqdm/4.59.0 CPython/3.8.8
|
Release files / scArches-0.6.1-py3-none-any.whl
| Download URL | scArches-0.6.1-py3-none-any.whl |
|---|---|
| Size | 130.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
90b4980db84ec2d6854dbc69076ea30283de3bed5ba5fb401a311d52cbdb6b75
|
|
BLAKE2b-256 checksum How to use checksums |
e5bdd689eefd2c23fd6a29add41c900f804f31f00f4b673b4d128d8c30765801
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/0.0.0 pkginfo/1.7.0 requests/2.25.1 setuptools/52.0.0.post20210125 requests-toolbelt/0.9.1 tqdm/4.59.0 CPython/3.8.8
|
