SeaSTAR (Sea-faring System for Tagging, Attribution and Redistribution) is a CLI and GUI application for processing biodiversity data collected at sea.
Use cases
Currently SeaSTAR focuses on processing data collected on the IFCB instrument. It has functionality for interactions with EcoTaxa and CRAB.
How to install and basic use
$ pip install seastartool
Collecting seastartool
Downloading seastartool-0.1-py3-none-any.whl.metadata (1.1 kB)
[...]
Successfully installed seastartool-0.1
SeaSTAR has in-built help which you can access using:
$ seastar --help
For more guides on how to use the software (such as to extract features or generate EcoTaxa tables), see the wiki.
An example with the IFCB
Given an example data:
raw/
D20250810/
D20250810T164958_IFCB225.adc
D20250810T164958_IFCB225.hdr
D20250810T164958_IFCB225.roi
D20250810T171346_IFCB225.adc
D20250810T171346_IFCB225.hdr
D20250810T171346_IFCB225.roi
D20250810T173732_IFCB225.adc
Extracting features (IFCB)
$ seastar ifcb_v4_features -i raw/D20250810/*.hdr -o features/D20250810/
Creating EcoTaxa tables
$ seastar ifcb_to_ecotaxa -i raw/D20250810/*.hdr ./metadata/A16N_metadata_filtered.csv --operator "Sample Operator" --qcdby "Sample Supervisor" --project "Sample Project" --nonull --ship "Sample Ship" --depth 5 -o
1 maintainer
Metadata
1 maintainer
Release files for seastartool 0.18
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| seastartool-0.18.tar.gz | 114.2 kB | Without provenance | Details for seastartool-0.18.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| seastartool-0.18-py3-none-any.whl | Python 3 | none | any | Details for seastartool-0.18-py3-none-any.whl |
Total release size: 159.8 kB
Release files / seastartool-0.18.tar.gz
| Download URL | seastartool-0.18.tar.gz |
|---|---|
| Size | 114.2 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / seastartool-0.18-py3-none-any.whl
| Download URL | seastartool-0.18-py3-none-any.whl |
|---|---|
| Size | 45.5 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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twine/6.1.0 CPython/3.13.5
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