sequencelib 0.1.0

(Beginning of) library for analyzing ancestral reconstructions of DNA or protein sequences

anclib: python library for analyzing ancestral reconstructions of sequences on phylogenies

Using classes and methods in anclib.py it is possible to parse and analyze text files containing results related to ancestral reconstruction of DNA or protein sequences. (Rudimentary - beginning of project)

Availability

The anclib.py source code is available on GitHub: https://github.com/agormp/anclib and can be installed from PyPI: https://pypi.org/project/anclib/

Installation

python3 -m pip install anclib

Upgrading to latest version:

python3 -m pip install --upgrade anclib

Dependencies

Python

The anclib library depends on these other python modules, which are automatically included when using pip to install:

• phylotreelib library
• sequencelib library
• NumPy package
• pandas library
• rpy2 package
• Levenshtein Python C extension module

R

The anclib.py library requires R to be installed, along with the following R-packages:

• tidyverse
• ape
• tidytree

Highlights

To be written