sfkit 0.0.47

Some CLI Tools For The Secure Multi-party Genomic Analysis Website

sfkit

sfkit is a collection of CLI tools to help run certain types of secure multi-party computation on genomic data. It is a companion to the website here.

Documentation

You can read the full documentation here.

Prerequisites

python3

Installation

pip install sfkit

Usage

Usage: sfkit <auth | setup_networking | generate_personal_keys | register_data | encrypt_data (MPC-only) | run_protocol>

• auth: Authenticate with the CLI.
• set_study (deprecated): Set the study you are using.
• setup_networking: Setup the networking, including your IP address and any relevant ports.
• generate_personal_keys: Generate your public and private cryptographic keys for use in encrypting the data.
• register_data: Register and validate your data.
• encrypt_data: Encrypt your data. (used only in the MPC GWAS protocol)
• run_protocol: Run the protocol. As this command may be long-running, it is recommended that you run it using nohup. This will prevent it from terminating if you close this window/terminal. For example, nohup sfkit run_protocol & tail -f nohup.out. You can also use a tool like screen or tmux.

Questions

If you have questions or concerns, you can reach me at [e-mail].