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A light-weight package for Andor SIF file analysis

Project description

SIF-Tools

SIF-Tools is a light-weight Python toolkit designed to read .sif data files from an Andor Solis spectrometer. This toolkit includes a set of utilities for opening, analyzing, and plotting data from .sif files, providing a convenient way to handle spectrometer data in scientific workflows.

This Toolkit borrows, and is adapted, from sif_parser by fujiisoup.

Features

  • Read .sif files: Efficiently load and parse .sif files from Andor Solis spectrometers.
  • Data manipulation: Tools for handling and processing spectrometer data.
  • Visualization: Plot data directly from .sif files.

Requirements

  • Python >= 3.6
  • NumPy
  • Scipy

Installation

  • Pip install
pip install sif-toolkit
  • Clone the repository
git clone https://github.com/BjornFS/SIF-Toolkit.git

Usage

Importing SIF-Tools in a Python Script

Calling functions directly:

from sif_tools import sif2array

file = '/Users/user/location/file.sif'
data = sif2array(target=file, reduce_noise=False, window='narrow')

or

from sif_tools import hyperspectrum

bg = 'test_background.sif'
directory = 'UnitTests/UnitTest files'

data = hyperspectrum(directory = directory, background = bg, size = (4,4), reduce_noise=True, window='pinched')

which produces the data structure to create:

hyperspectrum image

See examples for more functions and usage.

Support

If you encounter any issues or have questions, feel free to open an issue on the GitHub repository.

Contributing

We welcome contributions! Please fork the repository and submit pull requests.

Authors

Project details


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