Serovar predictions from Salmonella whole-genome sequence assemblies by determination of antigen geneand cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction.

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  • License: Apache Software License (Apache 2.0)
  • Author: Peter Kruczkiewicz
  • Tags Salmonella, serotyping, genotyping, cgMLST, BLAST, Mash, MinHash
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  • License: Apache Software License (Apache 2.0)
  • Author: Peter Kruczkiewicz
  • Tags Salmonella, serotyping, genotyping, cgMLST, BLAST, Mash, MinHash
Classifiers

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