Sixgill
Six-frame Genome-Inferred Libraries for LC-MS/MS
What is Sixgill?
Sixgill is a tool for using shotgun metagenomics sequencing reads to construct databases of ‘metapeptides’: short protein fragments for database search of LC-MS/MS metaproteomics data. A comprehensive set of resources for building and using metapeptide databases is here.
Required Python versions
Sixgill supports Python 2.7
Project dependencies
Sixgill uses the following python packages:
Installation
Get pip, if you don’t have it yet.
Install Sixgill and its dependencies:
pip install biopython pysam sixgill
Documentation
The Sixgill wiki contains more detailed information on using Sixgill.
1 maintainer
Metadata
1 maintainer
Release files for sixgill 0.2.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| sixgill-0.2.4.tar.gz | 12.6 kB | Details |
Release files / sixgill-0.2.4.tar.gz
| Download URL | sixgill-0.2.4.tar.gz |
|---|---|
| Size | 12.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
58b4c2720e5fa14e6522bb0aa7e4b6b2a318b7ce91283cf63c7c83227afc2943
|
|
BLAKE2b-256 checksum How to use checksums |
84957ce89b21cce62349507433b50faeae068aae6da53e8b6a6078725c4a225d
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
