skeletonkey 0.4.0

A bare-bones configuration managment tool.

SkeletonKey: A Bare-bones Configuration Management Tool

skeletonkey is a simple, lightweight, and flexible configuration management tool that allows you to manage complex configurations for your applications using YAML files. It dynamically loads classes and their arguments at runtime, making it easy to set up and modify your projects.

Installation

To install skeletonkey via pip, run the following command:

pip install skeletonkey

Usage

Below is an example of how to use skeletonkey in your project:

import skeletonkey

class MyModel:
    def __init__(self, layer_size: int, activation: str) -> None:
        self.layer_size = layer_size
        self.activation = activation

@skeletonkey.unlock("config.yaml")
def main(args):
    model = skeletonkey.instantiate(args.model)
    print("Model layer size: ", model.layer_size)
    print("Model activation: ", model.activation)
    print("Number of Epochs: ", args.epochs)

if __name__ == "__main__":  
    main()

To run the example above, create a config.yaml file with the following content:

epochs: 128
model:
  _instance_: main.MyModel
  layer_size: 128
  activation: relu

Working with Config

Parsed arguments are returned as a Config object. It behaves like a standard namespace object.

• Attribute or item access: args.model.layer_size
• Reassign config values in code: args.model.layer_size = 256
• Convert to dict: dict(args) or args.to_dict()
• Deep copy: args.copy()
• Deep update with dotted keys: args.update({"model.layer_size": 256}) or args.update(model_subconfig_obj)
• Save to YAML: args.to_yaml("out.yaml")
• Instantiate inline: any node can call .instantiate()

Overwriting Arguments

Overwriting default config arguments is easy with skeletonkey.

To execute the script and overwrite default arguments, use this command:

python project.py --epochs 256

Moreover, skeletonkey allows you to conveniently work with nested configurations. When dealing with nested arguments in a configuration file, skeletonkey enables you to overwrite default configuration values using dot-separated keys.

For instance, if your configuration file has a nested YAML, you can overwrite the default values like this:

python project.py --model.parameters.layer_size 256

The resulting Config object will contain nested Config objects that can be accessed using dot notation, such as args.model.parameters.layer_size.

The config path argument in @skeletonkey.unlock() is optional, and you can point to a config at runtime using the CLI argument --config. For example: python main.py --config /path/to/config.yaml.

Defining Flags in Configuration

Flags can be defined in the configuration YAML file using the ? prefix followed by the flag name. The value of the flag is set as true or false. Flags allow a user to switch to debug mode without having to modify the configuration file or temporarily enable/disable specific features for testing without changing the configuration.

For example:

?debug: false

In the above example, a flag named debug is defined and set to false.

Once defined in the configuration, flags can be overridden using command-line arguments. To override a flag, simply pass the flag name prefixed with --.

python your_script.py --debug

Executing the above command will flip the value of the debug flag. If it was initially set to false in the configuration YAML, it will be changed to true, and vice versa.

Using Environment Variables in Configuration

Environment variables can be incorporated in the configuration YAML file by using the $ prefix followed by the name of the environment variable. This feature allows the user to store sensitive information, like API keys or database credentials, outside of the configuration file for security reasons. Additionally, a user can use different configurations for development, staging, and production environments by merely setting environment variables.

For example:

$DATABASE_URL: "default_database_url"

In the above example, the configuration will look for an environment variable named DATABASE_URL. If the environment variable exists, its value will be used; if not, the fallback value "default_database_url" will be utilized.

Instantiating Objects

skeletonkey.instantiate builds objects described in YAML. Within your YAML config, you use one of these three keywords:

• _instance_: import and fully construct a class.
• _partial_: return functools.partial with provided kwargs bound for later completion.
• _fetch_: return a function without calling it.

Instantiation recurses through nested configs, so subcomponents are built automatically. To instatiate an object in skeletonkey, you can either use the function (skeletonkey.instantiate(args.model)) or the method on any Config node (args.model.instantiate()).

Default Configuration Files

skeletonkey can merge other YAML files into your main config using a profiles section. The selected profile points to one or more YAML files that are merged before argument parsing.

Example:

profiles:
  ~train:
    default: defaults/train.yaml
    model:
      head: models/train/head.yaml
      backbone: models/train/backbone.yaml
    dataset: datasets/train_dataset.yaml
  debug:
    default: defaults/debug.yaml
    model:
      head: models/debug/head.yaml
      backbone: models/debug/backbone.yaml
    dataset: datasets/debug_dataset.yaml

Select a profile via positional profile argument or --profile; entries prefixed with ~ are treated as the default when no profile is provided.

Using Modular Subconfigurations

skeletonkey introduces the keyring feature, allowing users to modularize their configurations using arbitrary subconfigurations.

The keyring feature requires users to define a keyring section in their main configuration file. Within this section, users can reference various subconfigurations that reside in separate files.

For example:

keyring:
  models: 
    model1: subconfigs/model.yaml
    model2: subconfigs/model.yaml
  datasets:
    mnist: subconfigs/mnist.yaml
    iris: subconfigs/iris.yaml

In the above configuration, model1, model2, mnist, and iris are references to separate subconfigurations that are stored in their respective YAML files under the subconfigs directory. Using the skeletonkey.instantiate method, users can create instances of the MyModel class with the specified parameters from the subconfiguration.

Given this setup, here's how you can access values from these subconfigurations in your Python code:

@skeletonkey.unlock("config.yaml")
def main(args):
    model1_config = args.models.model1
    model2_config = args.models.model2
    mnist_targets = args.datasets.mnist.num_targets
    iris_targets = args.datasets.iris.num_targets

Note: This assumes that num_targets is defined in both the mnist and the iris subconfigs.