Implementation of multiplex Leiden for analysis of spatial omics data.
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SpatialLeiden
SpatialLeiden is an implementation of
Multiplex Leiden clustering
that can be used to cluster spatially resolved omics data.
SpatialLeiden integrates with the scverse by leveraging
scanpy and anndata
but can also be used independently.
Installation
spatialleiden is available on PyPI and
bioconda.
# PyPI
pip install spatialleiden
# or conda
conda install bioconda::spatialleiden
For detailed installation instructions please refer to the documentation.
Documentation
For documentation of the package please refer to the ReadTheDocs page.
Citations
If you are using spatialleiden for your research please cite
Müller-Bötticher, N., Sahay, S., Eils, R., and Ishaque, N. "SpatialLeiden - Spatially-aware Leiden clustering" bioRxiv (2024) https://doi.org/10.1101/2024.08.23.609349
Versioning
This project follows the SemVer guidelines for versioning.
License
This project is licensed under the MIT License - for details please refer to the LICENSE file.
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