From a X,Y list of detected spots, assigns each spot to a cell based on a segmentation mask
Project description
spot2cell
This tool assigns single-molecule detected spots to their respective cells in a tissue. It is designed to work with single-molecule FISH data technologies, but can be used with other types of data as well.
Installation
pip install spot2cell
Docker
Build Docker image from Dockerfile
docker build -t spot2cell .
CLI
spot2cell --help
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