StokeD
StokeD solves the Stokesian dynamics (SD) equations for N interacting particles. SD is a generalization of Brownian dynamics (BD) that includes hydrodynamic coupling interactions.
Electrically charged particles repulsed from each other confined in a harmonic potential
Seven particles spinning due to an applied torque; the rotation of the fluid results in translational motion of the outer particles
Features
- Hydrodynamic coupling interactions can be turned on or off
- Flexible interface for user-defined particle interactions
- Several interactions already available: point electrostatics and electrodynamics, screened Coulomb, van der Walls, hard-sphere collisions, gravity
- Animation module for visualizing trajectories
Installation
StokeD can be installed with pip
pip install stoked
Usage
See the examples folder for how to use StokeD.
Run any of the available examples without explicit installation using uv:
| Command | Description |
|---|---|
uvx stoked free_particle |
Free Brownian diffusion in 3D |
uvx stoked estatics |
Electrostatic interactions with harmonic confinement |
uvx stoked ellipsoid |
Ellipsoidal particle with external force and torque |
uvx stoked tt_coupling |
Hydrodynamic translation-translation coupling |
uvx stoked rt_coupling |
Hydrodynamic rotation-translation coupling |
uvx stoked bigaussian_potential |
Particle in double-well potential |
For full documentation, see docs folder.
License
StokeD is licensed under the terms of the MIT license.
1 maintainer
Release files for stoked 1.0.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| stoked-1.0.0.tar.gz | 24.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| stoked-1.0.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size:61.6 kB
Release files / stoked-1.0.0.tar.gz
| Download URL | stoked-1.0.0.tar.gz |
|---|---|
| Size | 24.6 kB |
| Tags | Source |
|
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Release files / stoked-1.0.0-py3-none-any.whl
| Download URL | stoked-1.0.0-py3-none-any.whl |
|---|---|
| Size | 37.0 kB |
| Tags | Python 3 |
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