StonPy
StonPy is a package that allows users to store SBGN maps into a Neo4j database, query the database, and convert query results back to valid SBGN maps.
Installation
StonPy can be installed using pip:
pip install stonpy
Quickstart
from stonpy.core import STON
ston = STON("URI", "USER", "PASSWORD")
ston.create_map(sbgn_map="my_sbgn_file.sbgn", map_id="my_map_id")
my_query = """
MATCH (m:Map {id: 'my_map_id'})-[r:HAS_GLYPH]->(p:StoichiometricProcess)
RETURN p
"""
sbgn_files = ston.query_to_sbgn_file(
query=my_query,
sbgn_file="my_query_result.sbgn",
complete=True,
merge_records=False
)
print(sbgn_files)
Documentation
A complete documentation is available here.
1 maintainer
Metadata
1 maintainer
Release files for stonpy 0.2.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| stonpy-0.2.1.tar.gz | 2.4 MB | Without provenance | Details for stonpy-0.2.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| stonpy-0.2.1-py3-none-any.whl | Python 3 | none | any | Details for stonpy-0.2.1-py3-none-any.whl |
Total release size: 4.8 MB
Release files / stonpy-0.2.1.tar.gz
| Download URL | stonpy-0.2.1.tar.gz |
|---|---|
| Size | 2.4 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/4.0.1 CPython/3.10.9
|
Release files / stonpy-0.2.1-py3-none-any.whl
| Download URL | stonpy-0.2.1-py3-none-any.whl |
|---|---|
| Size | 2.4 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.10.9
|
Security for stonpy 0.2.1
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