TCFile python package
A basic image processing tool of tomocube data.
Installation
pip install TCFile
Use case
from TCFile import TCFile
tcfile = TCFile('test.TCF','3D') # ready for return 3D RI images
print(f"number of snapshots : {len(tcfile)}")
## Usage 1: handling each snapshots (numpy array)
data = tcfile[0]
print(f"shape of data : {data.shape}")
# or
for data in tcfile:
# do some operations on the data ...
pass
## Usage 2: handling fluorescence array
tcfile_fl = TCFile('test.TCF','3DFL')
fl_data = tcfile_fl[0]
## Usage 2: handling dask array
data = tcfile.asdask() # (T, Z, Y, X) array
Limitation
It does not support TCF writer due to the difficulty of configuring metadata and interoperability with commercial Tomocube software.
TODO
- rigorous tests
- TCFile converter
Any suggestions and comments are welcome!
Test
# install this package in editable mode
git clone https://github.com/ehgus/TCFile.git
cd TCFile
pip install -e .
# execute pytest
pytest
1 maintainer
Metadata
1 maintainer
Release files for TCFile 2024.11.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| tcfile-2024.11.0.tar.gz | 6.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| tcfile-2024.11.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 12.6 kB
Release files / tcfile-2024.11.0.tar.gz
| Download URL | tcfile-2024.11.0.tar.gz |
|---|---|
| Size | 6.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / tcfile-2024.11.0-py3-none-any.whl
| Download URL | tcfile-2024.11.0-py3-none-any.whl |
|---|---|
| Size | 5.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
python-requests/2.32.3
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