The first software for quantitative trajectory inference
Treefit for Python - The first software for quantitative trajectory inference
This is an implementation of Treefit in Python.
Treefit is a novel data analysis toolkit that helps you perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.
pip install treefit
The main functions are
fit = treefit.treefit(YOUR_SINGLE_CELL_GENE_EXPRESSION_DATA) treefit.plot(fit)
See https://hayamizu-lab.github.io/treefit-python/ for details.
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