Treefit for Python - The first software for quantitative trajectory inference
This is an implementation of Treefit in Python.
Treefit is a novel data analysis toolkit that helps you perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.
Install
pip install treefit
Usage
The main functions are treefit.treefit() and treefit.plot():
fit = treefit.treefit(YOUR_SINGLE_CELL_GENE_EXPRESSION_DATA)
treefit.plot(fit)
See https://hayamizu-lab.github.io/treefit-python/ for details.
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Release files for treefit 1.0.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
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| treefit-1.0.0.tar.gz | 23.0 kB | Details |
Release files / treefit-1.0.0.tar.gz
| Download URL | treefit-1.0.0.tar.gz |
|---|---|
| Size | 23.0 kB |
| Tags | Source |
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2cda66af871aece5c0f38c2a37a1c2ca9047277cd9cc912bc1be251086fd69a1
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twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/44.0.0 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.6
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