trVAE 
Introduction
A Keras (tensorflow < 2.0) implementation of trVAE (transfer Variational Autoencoder) .
trVAE can be used for style transfer in images, predicting perturbations responses and batch-removal for single-cell RNA-seq.
- For pytorch implementation check Here
Getting Started
Installation
Before installing trVAE package, we suggest you to create a new Python 3.6 (or 3.7) virtual env (or conda env) with the following steps:
1. Installing virtualenv
pip install virtualenv
2. Create a virtual with Python 3.6
virtualenv trvae-env --python=python3.6
3. trVAE package installation
To install the latest version from PyPI, simply use the following bash script:
pip install trvae
or install the development version via pip:
pip install git+https://github.com/theislab/trvae.git
or you can first install flit and clone this repository:
git clone https://github.com/theislab/trVAE
cd trVAE
pip install -r requirements
python setup.py install
Examples
- For perturbation prediction and batch-removal check this example from Haber et al.
Reproducing paper results:
In order to reproduce paper results visit here.
2 maintainers
Metadata
2 maintainers
Release files for trVAE 1.1.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| trVAE-1.1.2.tar.gz | 22.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| trVAE-1.1.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 48.4 kB
Release files / trVAE-1.1.2.tar.gz
| Download URL | trVAE-1.1.2.tar.gz |
|---|---|
| Size | 22.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/3.2.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.9.1 tqdm/4.36.1 CPython/3.7.4
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Release files / trVAE-1.1.2-py3-none-any.whl
| Download URL | trVAE-1.1.2-py3-none-any.whl |
|---|---|
| Size | 26.3 kB |
| Tags | Python 3 |
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| Uploaded via |
twine/3.2.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.9.1 tqdm/4.36.1 CPython/3.7.4
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