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Simple interface for

Project description

map a string of whitespace seperated entries from one format onto another using uniprots mapping api

    query: to be mapped
    f: from ACC | P_ENTREZGENEID | ...
    t: to ...
    format: tab by default

    for a list of all possible mappings visit


From source (UNIX) as standalone

Clone the git repository

git clone

Make the script executable and add it to your PATH:

chmod +x uniprot_mapper/uniprot_mapper/
cd /usr/local/bin
sudo ln -s /path/to/ .


standalone ACC P_ENTREZGENEID acc_file map_file

This will read UniprotIDs seperated by whitespaces from acc_file and store them to map_file.

Using a pipe:


will print the result to stdout which can be redirected further

inside a python script

import uniprot_mapper as mapper

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Files for uniprot_mapper, version 0.6
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