Vivarium-Interface

Vivarium-Interface is the entry point to the Vivarium 2.0 ecosystem. By integrating tools from multiple repositories, it provides everything needed to design, validate, simulate, and visualize multiscale cellular systems:

• Bigraph Schema: A robust, serializable type system for defining and manipulating objects and edges in simulations.
• Process-Bigraph: A composite engine and process interface for simulating distributed processes.
• Bigraph-Viz: A visualization library for creating diagrams of process-bigraph configurations.

Vivarium-Interface unifies these tools with a simple Python API, enabling users to design and execute composite simulations.

Note: This project is still in development.

Features

• Python API that facilitates building multiscale composites.
• Manage and run simulations with composite processes.
• Serialize and save simulation states.
• Generate visual diagrams of the simulation.
• Retrieve and format simulation results.

Demos

• Vivarium Basic Demo.