Whole Genome Duplication Identification
Project description
WGDI
| Author | Pengchuan Sun (sunpengchuan) |
| sunpengchuan@gmail.com | |
| License | BSD |
Description
Finely identify the whole genome duplication events and generate the genomic homology tables. This is a gold standard for complex genomic analysis,including the construction of homologous gene dotplot, event-related genomic alignment, and synonymous substitutions, and differences in different evolution rates, etc.
Installation
Python package and command line interface (CLI) for the analysis of whole genome duplications (WGDs). 安装需要的环境是python3.
pip3 install wgdi
For external software requirements: please consult the relevant section in the docs: https://wgdi.readthedocs.io/en/latest/index.html#external-software
To use as a Python package as well as to find additional documentation and examples for the CLI, please consult the docs athttp://wgdi.readthedocs.io/en/latest/
Third party software
paml
mafft
muscle
pal2nal
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