WSIdemerger
WSIdemerger is a Python package for extracting image patches from SVS files and performing color normalization.
Installation
You can install the package using pip:
pip install WSIdemerger
Usage
Extract Patches from SVS
from WSIdemerger.Patches_generation import extract_patches_from_svs
input_path = 'path_to_your_svs_file'
output_path = 'path_to_output_directory'
excel_path = 'path_to_output_excel_file'
patch_size = 512
target_magnification = 20
saturation_threshold = 50
extract_patches_from_svs(input_path, output_path, excel_path, patch_size, target_magnification, saturation_threshold)
Normalize Images
from WSIdemerger.Colour_standardisation import normalize_images
input_folder = 'path_to_input_images'
reference_image_path = 'path_to_reference_image'
output_folder = 'path_to_output_directory'
normalize_images(input_folder, reference_image_path, output_folder)
1 maintainer
Metadata
1 maintainer
Release files for WSIdemerger 0.1.8
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| wsidemerger-0.1.8.tar.gz | 4.4 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| WSIdemerger-0.1.8-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 9.4 kB
Release files / wsidemerger-0.1.8.tar.gz
| Download URL | wsidemerger-0.1.8.tar.gz |
|---|---|
| Size | 4.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.0 CPython/3.10.14
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Release files / WSIdemerger-0.1.8-py3-none-any.whl
| Download URL | WSIdemerger-0.1.8-py3-none-any.whl |
|---|---|
| Size | 4.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.0 CPython/3.10.14
|
