xcltk - Toolkit for XClone
Project description
xcltk
xcltk is a toolkit for XClone (warning: under development, not stable)
All release notes are available at doc/release.rst
Installation
xcltk is avaliable through pypi. To install, type the following command
line, and add -U
for upgrading:
pip install -U xcltk
Alternatively, you can install from this GitHub repository for latest (often development) version by following command line
pip install -U git+https://github.com/hxj5/xcltk
In either case, if you don't have write permission for your current Python environment, we suggest creating a separate conda environment or add --user for your current one.
Manual
You can check the full parameters with xcltk -h
.
Program: xcltk (Toolkit for XClone)
Version: 0.1.16
Usage: xcltk <command> [options]
Commands:
-- BAF calculation
fixref Fix REF, ALT and GT.
rpc Reference phasing correction.
pileup Pileup, support unique counting.
-- RDR calculation
basefc Basic feature counting.
-- Region operations
convert Convert different region file formats.
-- Others
-h, --help Print this message and exit.
-V, --version Print version and exit.
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