# PyPTS: A Python Plant Tissue Simulation tools
PyPTS is a Python package for creating cell-based simulations of plant tissue. It provides the basic building blocks for prototyping and running small to medium scale simulations of two dimensional plant tissues.
Author: Przemyslaw Klosiewicz (przemek.klosiewicz@gmail.com)
License: BSD 3-Clause, cfr. LICENSE.txt
## Installation
The standard way of installing PyPTS is either through pip:
pip install PyPTS
or downloading the sources / cloning the repository and running:
python ./setup.py install [–user]
inside the PyPTS source tree.
### Requirements
Currently used versions are indicated. Code possibly works with slightly older versions as well.
Python 2.7
NumPy (Used all throughout the code)
SciPy (Maily for the solvers)
h5py (I/O for tissue files)
Matplotlib (Plotting tissue structures)
PySide (optional; for tissue_plot.py visualization)
MPI4Py (optional; for running bulk sweep jobs, cfr: mpi_*.py)
## Usage
See pypts/examples for some example scripts
1 maintainer
Metadata
1 maintainer
Release files for PyPTS 0.2.5
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| File | Size | Uploaded | Provenance | Actions |
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Release files / PyPTS-0.2.5.tar.gz
| Download URL | PyPTS-0.2.5.tar.gz |
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