airpg: Automatically accessing the inverted repeats of archived plastid genomes
A Python package for automatically accessing the inverted repeats of thousands of plastid genomes stored on NCBI Nucleotide
INSTALLATION
To get the most recent stable version of airpg, run:
pip install airpg
Or, alternatively, if you want to get the latest development version of airpg, run:
pip install git+https://github.com/michaelgruenstaeudl/airpg.git
EXAMPLE USAGE
Tutorial 1: Very short survey (runtime ca. 5 min.; for the impatient)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the past 10 days.
Tutorial 2: Short survey (runtime ca. 15 min.; for testing)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the current month.
Tutorial 3: Medium survey (runtime ca. 5 hours)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide in 2019 only. Note: The results of this survey are available on Zenodo via DOI 10.5281/zenodo.4335906
Tutorial 4: Full survey (runtime ca. 19 hours; with explanations)
Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide from January 2000 until, and including, December 2020. Note: The results of this survey are available on Zenodo via DOI 10.5281/zenodo.4335906
CHANGELOG
See CHANGELOG.md for a list of recent changes to the software.
2 maintainers
Metadata
2 maintainers
Release files for airpg 1.1.4
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| airpg-1.1.4.tar.gz | 25.5 kB | Without provenance | Details for airpg-1.1.4.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| airpg-1.1.4-py3-none-any.whl | Python 3 | none | any | Details for airpg-1.1.4-py3-none-any.whl |
Total release size: 81.1 kB
Release files / airpg-1.1.4.tar.gz
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Release files / airpg-1.1.4-py3-none-any.whl
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