by Michael Hoffman <michael.hoffman at utoronto dot ca>
Description
Genomedata is both a format for efficient storage of multiple tracks of numeric data anchored to a genome and a python interface to genomic datasets. The file format allows fast random access to hundreds of gigabytes of data, while retaining a small disk space footprint. We have also developed utilities to load data into this format.
Specifically, the genomedata package provides access to genome-scale data, either using an HDF5 container or a bigWig file.
Please see the following URL (and linked documentation) for information, installation, and support: https://hoffmanlab.org/proj/genomedata/
Documentation
Live documentation based on this repository can be found on Read the Docs.
License
Genomedata is free software: you can redistribute it and/or modify it under the terms of version 2 of the GNU General Public License as published by the Free Software Foundation.
Genomedata is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
2 maintainers
Metadata
2 maintainers
Release files for genomedata 1.7.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| genomedata-1.7.4.tar.gz | 1.9 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| genomedata-1.7.4-cp39-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl | CPython 3.9 | abi3 | Linux glibc 2.27+ x86-64, Linux glibc 2.28+ x86-64 | Details |
Total release size: 3.5 MB
Release files / genomedata-1.7.4.tar.gz
| Download URL | genomedata-1.7.4.tar.gz |
|---|---|
| Size | 1.9 MB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.11
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Release files / genomedata-1.7.4-cp39-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl
| Download URL | genomedata-1.7.4-cp39-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.9 Linux glibc 2.27+ x86-64 Linux glibc 2.28+ x86-64 abi3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.11
|
