`magenpy`: Modeling and Analysis of (Statistical) Genetics data in python

magenpy is a Python package for modeling and analyzing statistical genetics data. The package provides tools for:

Reading and processing genotype data in plink BED format.
Efficient LD matrix construction and storage in Zarr array format.
Data structures for harmonizing various GWAS data sources.
- Includes parsers for commonly used GWAS summary statistics formats.
Simulating polygenic traits (continuous and binary) using complex genetic architectures.
- Multi-cohort simulation scenarios (beta)
- Simulations incorporating functional annotations in the genetic architecture (beta)
Interfaces for performing association testing on simulated and real phenotypes.
Preliminary support for processing and integrating genomic annotations with other data sources.

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AI Usage

This project is developed using AI-assisted technologies. Please review our AI Declaration for full transparency on automated pipelines.

Metadata

Release files for magenpy 0.2.3

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Source distribution for magenpy 0.2.3
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magenpy-0.2.3.tar.gz	1.4 MB	Oct 27, 2026	Without provenance	Details for magenpy-0.2.3.tar.gz

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Total release size: 56.7 MB

Release files / magenpy-0.2.3.tar.gz

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This release

0.2.3 This release

Oct 27, 2026 17 release files No provenance

File	Interpreter	ABI	Platform	Actions Reset
magenpy-0.2.3-cp313-cp313-win_amd64.whl 2.2 MB Oct 27, 2026 Without provenance	CPython 3.13	CPython 3.13	Windows x86-64	Details for magenpy-0.2.3-cp313-cp313-win_amd64.whl
magenpy-0.2.3-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 7.4 MB Oct 27, 2026 Without provenance	CPython 3.13	CPython 3.13	Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64	Details for magenpy-0.2.3-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
magenpy-0.2.3-cp313-cp313-macosx_11_0_arm64.whl 2.0 MB Oct 27, 2026 Without provenance	CPython 3.13	CPython 3.13	macOS 11.0+ ARM64	Details for magenpy-0.2.3-cp313-cp313-macosx_11_0_arm64.whl
magenpy-0.2.3-cp313-cp313-macosx_10_13_x86_64.whl 2.1 MB Oct 27, 2026 Without provenance	CPython 3.13	CPython 3.13	macOS 10.13+ x86-64	Details for magenpy-0.2.3-cp313-cp313-macosx_10_13_x86_64.whl
magenpy-0.2.3-cp312-cp312-win_amd64.whl 2.2 MB Oct 27, 2026 Without provenance	CPython 3.12	CPython 3.12	Windows x86-64	Details for magenpy-0.2.3-cp312-cp312-win_amd64.whl
magenpy-0.2.3-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 7.5 MB Oct 27, 2026 Without provenance	CPython 3.12	CPython 3.12	Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64	Details for magenpy-0.2.3-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
magenpy-0.2.3-cp312-cp312-macosx_11_0_arm64.whl 2.0 MB Oct 27, 2026 Without provenance	CPython 3.12	CPython 3.12	macOS 11.0+ ARM64	Details for magenpy-0.2.3-cp312-cp312-macosx_11_0_arm64.whl
magenpy-0.2.3-cp312-cp312-macosx_10_13_x86_64.whl 2.1 MB Oct 27, 2026 Without provenance	CPython 3.12	CPython 3.12	macOS 10.13+ x86-64	Details for magenpy-0.2.3-cp312-cp312-macosx_10_13_x86_64.whl
magenpy-0.2.3-cp311-cp311-win_amd64.whl 2.3 MB Oct 27, 2026 Without provenance	CPython 3.11	CPython 3.11	Windows x86-64	Details for magenpy-0.2.3-cp311-cp311-win_amd64.whl
magenpy-0.2.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 7.6 MB Oct 27, 2026 Without provenance	CPython 3.11	CPython 3.11	Linux glibc 2.24+ x86-64, Linux glibc 2.28+ x86-64	Details for magenpy-0.2.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
magenpy-0.2.3-cp311-cp311-macosx_11_0_arm64.whl 2.0 MB Oct 27, 2026 Without provenance	CPython 3.11	CPython 3.11	macOS 11.0+ ARM64	Details for magenpy-0.2.3-cp311-cp311-macosx_11_0_arm64.whl
magenpy-0.2.3-cp311-cp311-macosx_10_9_x86_64.whl 2.1 MB Oct 27, 2026 Without provenance	CPython 3.11	CPython 3.11	macOS 10.9+ x86-64	Details for magenpy-0.2.3-cp311-cp311-macosx_10_9_x86_64.whl
magenpy-0.2.3-cp310-cp310-win_amd64.whl 2.3 MB Oct 27, 2026 Without provenance	CPython 3.10	CPython 3.10	Windows x86-64	Details for magenpy-0.2.3-cp310-cp310-win_amd64.whl
magenpy-0.2.3-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 7.5 MB Oct 27, 2026 Without provenance	CPython 3.10	CPython 3.10	Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64	Details for magenpy-0.2.3-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
magenpy-0.2.3-cp310-cp310-macosx_11_0_arm64.whl 2.0 MB Oct 27, 2026 Without provenance	CPython 3.10	CPython 3.10	macOS 11.0+ ARM64	Details for magenpy-0.2.3-cp310-cp310-macosx_11_0_arm64.whl
magenpy-0.2.3-cp310-cp310-macosx_10_9_x86_64.whl 2.1 MB Oct 27, 2026 Without provenance	CPython 3.10	CPython 3.10	macOS 10.9+ x86-64	Details for magenpy-0.2.3-cp310-cp310-macosx_10_9_x86_64.whl

magenpy 0.2.3

magenpy: Modeling and Analysis of (Statistical) Genetics data in python