mwatershed

pytest ruff cargo

pypi

A rusty mutex watershed

See docs here

Installation

pip install mwatershed

Features

  • A mutex watershed implementation for affinities
  • Should handle up to 6 dimensional arrays of fragments (7 dimensions if you include offsets in affinities) but only tested on 2 and 3 dimensions

Usage

components = mwatershed.agglom(
    affinities: NDArray[np.float64],
    offsets: list[list[int]],
    seeds: NDArray[np.uint64],
    edges: Optional[list[tuple[usize, usize, f64]]] = None,
)

where:

  • affinities is a k+1 dimensional array of non nan affinities with leading dimension having size n
  • offsets is a list of length n of offset tuples of k integers
  • seeds is a k dimensional array of fragment ids. Note seeds.shape must be equal to affinities.shape[1:]. Any entry not equal to 0 is guaranteed to stay that way, any entry equal to zero has no priors.
  • edges is a list of (u, v, aff) tuples to insert arbitrary extra affinities between fragment ids

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for pattonw from gravatar.com pattonw

Credits

Author: William Patton

License

MIT License

Requires

Python >=3.11

Provides Extra

dev docs

Classifiers

Metadata

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for pattonw from gravatar.com pattonw

Credits

Author: William Patton

License

MIT License

Requires

Python >=3.11

Provides Extra

dev docs

Classifiers

Release files for mwatershed 0.5.4

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for mwatershed 0.5.4
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mwatershed-0.5.4.tar.gz 25.7 kB Without provenance Details for mwatershed-0.5.4.tar.gz

Built distributions (wheels)

Table of built distributions (wheels) for mwatershed 0.5.4
File Actions
mwatershed-0.5.4-pp311-pypy311_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 371.9 kB Without provenance PyPy 3.11 PyPy 3.11 7.3 Linux glibc 2.17+ x86-64 Details for mwatershed-0.5.4-pp311-pypy311_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
mwatershed-0.5.4-pp311-pypy311_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl 393.9 kB Without provenance PyPy 3.11 PyPy 3.11 7.3 Linux glibc 2.17+ IBM System/390x Details for mwatershed-0.5.4-pp311-pypy311_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl
mwatershed-0.5.4-pp311-pypy311_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl 511.7 kB Without provenance PyPy 3.11 PyPy 3.11 7.3 Linux glibc 2.17+ PowerPC 64-le Details for mwatershed-0.5.4-pp311-pypy311_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
mwatershed-0.5.4-pp311-pypy311_pp73-manylinux_2_17_armv7l.manylinux2014_armv7l.whl 372.9 kB Without provenance PyPy 3.11 PyPy 3.11 7.3 Linux glibc 2.17+ ARMv7l Details for mwatershed-0.5.4-pp311-pypy311_pp73-manylinux_2_17_armv7l.manylinux2014_armv7l.whl
mwatershed-0.5.4-pp311-pypy311_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 356.5 kB Without provenance PyPy 3.11 PyPy 3.11 7.3 Linux glibc 2.17+ ARM64 Details for mwatershed-0.5.4-pp311-pypy311_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
mwatershed-0.5.4-cp314-cp314-win_amd64.whl 204.2 kB Without provenance CPython 3.14 CPython 3.14 Windows x86-64 Details for mwatershed-0.5.4-cp314-cp314-win_amd64.whl
mwatershed-0.5.4-cp314-cp314-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 368.1 kB Without provenance CPython 3.14 CPython 3.14 Linux glibc 2.17+ x86-64 Details for mwatershed-0.5.4-cp314-cp314-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
mwatershed-0.5.4-cp314-cp314-manylinux_2_17_s390x.manylinux2014_s390x.whl 389.9 kB Without provenance CPython 3.14 CPython 3.14 Linux glibc 2.17+ IBM System/390x Details for mwatershed-0.5.4-cp314-cp314-manylinux_2_17_s390x.manylinux2014_s390x.whl
mwatershed-0.5.4-cp314-cp314-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl 507.7 kB Without provenance CPython 3.14 CPython 3.14 Linux glibc 2.17+ PowerPC 64-le Details for mwatershed-0.5.4-cp314-cp314-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
mwatershed-0.5.4-cp314-cp314-manylinux_2_17_armv7l.manylinux2014_armv7l.whl 368.9 kB Without provenance CPython 3.14 CPython 3.14 Linux glibc 2.17+ ARMv7l Details for mwatershed-0.5.4-cp314-cp314-manylinux_2_17_armv7l.manylinux2014_armv7l.whl
mwatershed-0.5.4-cp314-cp314-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 351.3 kB Without provenance CPython 3.14 CPython 3.14 Linux glibc 2.17+ ARM64 Details for mwatershed-0.5.4-cp314-cp314-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
mwatershed-0.5.4-cp314-cp314-macosx_11_0_arm64.whl 316.9 kB Without provenance CPython 3.14 CPython 3.14 macOS 11.0+ ARM64 Details for mwatershed-0.5.4-cp314-cp314-macosx_11_0_arm64.whl
mwatershed-0.5.4-cp314-cp314-macosx_10_12_x86_64.whl 326.6 kB Without provenance CPython 3.14 CPython 3.14 macOS 10.12+ x86-64 Details for mwatershed-0.5.4-cp314-cp314-macosx_10_12_x86_64.whl
mwatershed-0.5.4-cp313-cp313-win_amd64.whl 203.7 kB Without provenance CPython 3.13 CPython 3.13 Windows x86-64 Details for mwatershed-0.5.4-cp313-cp313-win_amd64.whl
mwatershed-0.5.4-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 367.6 kB Without provenance CPython 3.13 CPython 3.13 Linux glibc 2.17+ x86-64 Details for mwatershed-0.5.4-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
mwatershed-0.5.4-cp313-cp313-manylinux_2_17_s390x.manylinux2014_s390x.whl 389.5 kB Without provenance CPython 3.13 CPython 3.13 Linux glibc 2.17+ IBM System/390x Details for mwatershed-0.5.4-cp313-cp313-manylinux_2_17_s390x.manylinux2014_s390x.whl
mwatershed-0.5.4-cp313-cp313-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl 508.3 kB Without provenance CPython 3.13 CPython 3.13 Linux glibc 2.17+ PowerPC 64-le Details for mwatershed-0.5.4-cp313-cp313-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
mwatershed-0.5.4-cp313-cp313-manylinux_2_17_armv7l.manylinux2014_armv7l.whl 368.6 kB Without provenance CPython 3.13 CPython 3.13 Linux glibc 2.17+ ARMv7l Details for mwatershed-0.5.4-cp313-cp313-manylinux_2_17_armv7l.manylinux2014_armv7l.whl
mwatershed-0.5.4-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 350.9 kB Without provenance CPython 3.13 CPython 3.13 Linux glibc 2.17+ ARM64 Details for mwatershed-0.5.4-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
mwatershed-0.5.4-cp313-cp313-macosx_11_0_arm64.whl 317.4 kB Without provenance CPython 3.13 CPython 3.13 macOS 11.0+ ARM64 Details for mwatershed-0.5.4-cp313-cp313-macosx_11_0_arm64.whl
mwatershed-0.5.4-cp313-cp313-macosx_10_12_x86_64.whl 326.1 kB Without provenance CPython 3.13 CPython 3.13 macOS 10.12+ x86-64 Details for mwatershed-0.5.4-cp313-cp313-macosx_10_12_x86_64.whl
mwatershed-0.5.4-cp312-cp312-win_amd64.whl 204.0 kB Without provenance CPython 3.12 CPython 3.12 Windows x86-64 Details for mwatershed-0.5.4-cp312-cp312-win_amd64.whl
mwatershed-0.5.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 368.1 kB Without provenance CPython 3.12 CPython 3.12 Linux glibc 2.17+ x86-64 Details for mwatershed-0.5.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
mwatershed-0.5.4-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl 389.8 kB Without provenance CPython 3.12 CPython 3.12 Linux glibc 2.17+ IBM System/390x Details for mwatershed-0.5.4-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl
mwatershed-0.5.4-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl 508.6 kB Without provenance CPython 3.12 CPython 3.12 Linux glibc 2.17+ PowerPC 64-le Details for mwatershed-0.5.4-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
mwatershed-0.5.4-cp312-cp312-manylinux_2_17_armv7l.manylinux2014_armv7l.whl 368.8 kB Without provenance CPython 3.12 CPython 3.12 Linux glibc 2.17+ ARMv7l Details for mwatershed-0.5.4-cp312-cp312-manylinux_2_17_armv7l.manylinux2014_armv7l.whl
mwatershed-0.5.4-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 351.2 kB Without provenance CPython 3.12 CPython 3.12 Linux glibc 2.17+ ARM64 Details for mwatershed-0.5.4-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
mwatershed-0.5.4-cp312-cp312-macosx_11_0_arm64.whl 318.0 kB Without provenance CPython 3.12 CPython 3.12 macOS 11.0+ ARM64 Details for mwatershed-0.5.4-cp312-cp312-macosx_11_0_arm64.whl
mwatershed-0.5.4-cp312-cp312-macosx_10_12_x86_64.whl 326.4 kB Without provenance CPython 3.12 CPython 3.12 macOS 10.12+ x86-64 Details for mwatershed-0.5.4-cp312-cp312-macosx_10_12_x86_64.whl
mwatershed-0.5.4-cp311-cp311-win_amd64.whl 205.5 kB Without provenance CPython 3.11 CPython 3.11 Windows x86-64 Details for mwatershed-0.5.4-cp311-cp311-win_amd64.whl
mwatershed-0.5.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 370.7 kB Without provenance CPython 3.11 CPython 3.11 Linux glibc 2.17+ x86-64 Details for mwatershed-0.5.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
mwatershed-0.5.4-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl 392.3 kB Without provenance CPython 3.11 CPython 3.11 Linux glibc 2.17+ IBM System/390x Details for mwatershed-0.5.4-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl
mwatershed-0.5.4-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl 511.5 kB Without provenance CPython 3.11 CPython 3.11 Linux glibc 2.17+ PowerPC 64-le Details for mwatershed-0.5.4-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
mwatershed-0.5.4-cp311-cp311-manylinux_2_17_armv7l.manylinux2014_armv7l.whl 371.3 kB Without provenance CPython 3.11 CPython 3.11 Linux glibc 2.17+ ARMv7l Details for mwatershed-0.5.4-cp311-cp311-manylinux_2_17_armv7l.manylinux2014_armv7l.whl
mwatershed-0.5.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 354.4 kB Without provenance CPython 3.11 CPython 3.11 Linux glibc 2.17+ ARM64 Details for mwatershed-0.5.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
mwatershed-0.5.4-cp311-cp311-macosx_11_0_arm64.whl 320.3 kB Without provenance CPython 3.11 CPython 3.11 macOS 11.0+ ARM64 Details for mwatershed-0.5.4-cp311-cp311-macosx_11_0_arm64.whl
mwatershed-0.5.4-cp311-cp311-macosx_10_12_x86_64.whl 328.4 kB Without provenance CPython 3.11 CPython 3.11 macOS 10.12+ x86-64 Details for mwatershed-0.5.4-cp311-cp311-macosx_10_12_x86_64.whl

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