olinkform
The preprocessing lib for olink data
Free software: MIT license
Documentation: https://olinkform.readthedocs.io.
Usage
Parse a data file
from olinkform import parse
result = parse(path, version)
# version v1 or v2 are supported,
# which are corresponding to the old and new olink formats, individuallyThe result is a dict with the following format
{
"sampleId": {
"markerId" : {
"batch": string
"value": float,
"LOD": float,
"MDF": float
}
}
}Parse a data file to dataframe
from olinkform import parse_to_dataframe
df = parse_to_dataframe(path, version)The result is a dataframe with columns:
['batch', 'sample_id','marker', 'value', 'LOD', 'MDF']Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.0 (2020-06-01)
First release on PyPI.
1 maintainer
Metadata
1 maintainer
Release files for olinkform 0.5.0
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Total release size: 929.7 kB
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