PEMA: Peak matching for clustering and classification

PeakMatching

Peak clustering and classification validation using the WFsim

Installation

To install pema, one can easily get the latest version via Pipy. For increased usability one needs some XENONnT credentials, see this page.

pip install pema

Test installation

python -c "import pema ; print(pema.__version__) ; print('great succes')

0.7.0 / 2024-01-15

• np.float is deprecated by @dachengx in https://github.com/XENONnT/pema/pull/341
• Update RTD configuration by @dachengx in https://github.com/XENONnT/pema/pull/342
• Move simulation context to wfsim by @dachengx in https://github.com/XENONnT/pema/pull/344

Full Changelog: https://github.com/XENONnT/pema/compare/v0.6.5...v0.7.0

0.6.5 / 2023-09-12

• Trying to fix touching_windows bug by @FaroutYLq in https://github.com/XENONnT/pema/pull/333

0.6.4 / 2022-10-18

• Add test for event matching customization by @JoranAngevaare in https://github.com/XENONnT/pema/pull/241
• Update ax by @JoranAngevaare in https://github.com/XENONnT/pema/pull/259

Full Changelog: https://github.com/XENONnT/pema/compare/v0.6.3...v0.6.4

0.6.3 / 2022-06-08

• allow kwargs to context by @JoranAngevaare in https://github.com/XENONnT/pema/pull/227
• Test notebooks by @JoranAngevaare in https://github.com/XENONnT/pema/pull/228
• Add plotting tweak by @JoranAngevaare in https://github.com/XENONnT/pema/pull/233
• Bump nbsphinx from 0.8.8 to 0.8.9 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/230
• Bump strax from 1.2.2 to 1.2.3 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/231
• Bump straxen from 1.7.1 to 1.8.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/232

Full Changelog: https://github.com/XENONnT/pema/compare/v0.6.2...v0.6.3

0.6.0 / 2022-05-30

• simplify matching - keep multiple columns and fix + test chunking artefacts by @JoranAngevaare in https://github.com/XENONnT/pema/pull/225

Full Changelog: https://github.com/XENONnT/pema/compare/v0.5.2...v0.6.0

0.5.0 / 2022-05-29

• Extend match_acceptance_extended with peak level info by @JoranAngevaare in https://github.com/XENONnT/pema/pull/224

Full Changelog: https://github.com/XENONnT/pema/compare/v0.4.4...v0.5.0

0.4.4 / 2022-05-29

• Update requirements by @JoranAngevaare in https://github.com/XENONnT/pema/pull/211
• Bump typing-extensions from 4.1.1 to 4.2.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/212
• Bump straxen from 1.6.1 to 1.6.2 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/214
• Bump straxen from 1.6.2 to 1.7.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/216
• Test with latest strax by @JoranAngevaare in https://github.com/XENONnT/pema/pull/217
• Bump straxen from 1.7.0 to 1.7.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/218
• Bump scipy from 1.8.0 to 1.8.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/219
• Update dependabot.yml by @JoranAngevaare in https://github.com/XENONnT/pema/pull/221
• cmt_version by @JoranAngevaare in https://github.com/XENONnT/pema/pull/222
• test with wfsim pre release by @JoranAngevaare in https://github.com/XENONnT/pema/pull/223

Full Changelog: https://github.com/XENONnT/pema/compare/v0.4.3...v0.4.4

0.4.3 / 2022-04-12

• Bump utilix from 0.6.6 to 0.6.7 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/194
• Bump actions/checkout from 2 to 3 by @dependabot in https://github.com/XENONnT/pema/pull/193
• Bump xarray from 0.21.1 to 2022.3.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/192
• Bump straxen by @JoranAngevaare in https://github.com/XENONnT/pema/pull/195
• Bump uproot from 4.2.0 to 4.2.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/197
• Bump pytest from 7.0.1 to 7.1.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/198
• Bump uproot from 4.2.1 to 4.2.2 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/201
• Bump tqdm from 4.63.0 to 4.63.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/203
• Bump pytest from 7.1.0 to 7.1.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/200
• Bump dask from 2022.2.1 to 2022.3.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/199
• Bump sphinx from 4.4.0 to 4.5.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/202
• remote dependabot by @JoranAngevaare in https://github.com/XENONnT/pema/pull/204
• WFSim bump by @JoranAngevaare in https://github.com/XENONnT/pema/pull/208
• Fix logger classes in pema by @JoranAngevaare in https://github.com/XENONnT/pema/pull/210

Full Changelog: https://github.com/XENONnT/pema/compare/v0.4.2...v0.4.3

0.4.2 / 2022-03-02

• ignore raises on testing (#189)
• Test with straxen v1.4.0 (#190)

0.4.1 / 2022-02-16

• Fix for new versions (#180)

0.4.0 / 2022-02-11

• Field usage updates (#173)
• Update docs requirements (#155)
• Bump straxen (#167)
• Only allow py>3.8 (#165)

Notes:

• updates to peak matching based on S2s, lineages changes

0.3.6 / 2021-12-10

• Use raw_area_trigger for reconstruction bias (#123)
• add gitattributes, fix #132 (#133)
• test making docs (#137)
• Requirements (many)

0.3.5 / 2021-12-10

• Fix bias to #112 (#122)

0.3.4 / 2021-12-10

• Fix bias plots (#112)
• Bump WFSim (#121)
• Pin pymongo (#116)

0.3.3 / 2021-11-08

• Add rr matrix (#96, #101)

0.3.2 / 2021-11-08

• Several tweaks to v0.3.1 (ec3f2821eab059c812db9fec2e723da6c5cbfc8e, 9d5bae41b91855041dc61717594da70cae5e8292, 437677c301003f4e9812420603390b8b3b93f27b, 437677c301003f4e9812420603390b8b3b93f27b)

0.3.1 / 2021-11-03

• use overlap window for matching, include events (#86)

0.3.0 / 2021-10-24

• New wfsim inst (#67)
• Increase the coverage (#65, #66)
• Make compatible with strax(en) -1.0.0rc (#44)

0.2.2 / 2021-08-10

• Fix master for strax, straxen, wfsim == 0.16.1, 0.19.3, 0.5.6 (#23)
• Fix docs requirements (#34, #32)
• Create codeql-analysis.yml (#35)
• Fix saving as SVG (#21)
• Register from module (#22)
• Less pinned requirements (#32)

0.2.1 / 2021-60-17

• Allow plot dump to pickle (#20)
• minor commits

0.2.0 / 2021-05-21

• Increased testing, faster matching (#17)
• Update notebooks to be more plug and play (#13)
• Use actions for testing (#15)

0.1.0 / 2021-04-10

• Restructured code into plugins
• Arbitrary acceptance to allow for penalty factors
• Install CI:
  • CodeFactor
  • Coveralls
  • Automated documentation
  • Testing

0.0.1 / 2020-11-25

• Further prepare the package and prepare for deployment

0.0.0 / 2020-11-23

• Initial commits